Bertil Schmidt
- Beziehungen:
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- Deep semantic lung segmentation for tracking potential pulmonary perfusion biomarkers in chronic obstructive pulmonary disease (COPD): The multi-ethnic study of atherosclerosis COPD study
- RabbitQCPlus 2.0: More efficient and versatile quality control for sequencing data
- RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures.
- Online Event Selection for Mu3e using GPUs.
- AnySeq/GPU: A Novel Approach for Faster Sequence Alignment on GPUs.
- AnySeq/GPU: a novel approach for faster sequence alignment on GPUs.
- Accelerating JPEG Decompression on GPUs.
- Third Workshop on using Emerging Parallel Architectures
- Fully automated detection of primary sclerosing cholangitis (PSC)-compatible bile duct changes based on 3D magnetic resonance cholangiopancreatography using machine learning
- cuDTW plus plus : Ultra-Fast Dynamic Time Warping on CUDA-Enabled GPUs
- Reconfigurable Accelerator for the Word-Matching Stage of BLASTN
- High-speed exhaustive 3-locus interaction epistasis analysis on FPGAs
- GPU-accelerated exhaustive search for third-order epistatic interactions in case-control studies
- SparseHC: a memory-efficient online hierarchical clustering algorithm
- Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems
- CUDA-enabled Sparse Matrix-Vector Multiplication on GPUs using atomic operations
- MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures
- CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions
- FeatherCNN: Fast Inference Computation with TensorGEMM on ARM Architectures
- Massively Parallel Huffman Decoding on GPUs
- Automatic Generation of High-Performance Convolution Kernels on ARM CPUs for Deep Learning
- Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures
- Parallel DNA Sequence Alignment on the Cell Broadband Engine
- A Parallel BSP Algorithm for Irregular Dynamic Programming
- Molecular Dynamics Simulations on Commodity GPUs with CUDA
- Accurate Scanning of Sequence Databases with the Smith-Waterman Algorithm
- Hierarchical Grid Computing for High‐Performance Bioinformatics
- Big Data in metagenomics: Apache Spark vs MPI
- LightSpMV: Faster CSR-based Sparse Matrix-Vector Multiplication on CUDA-enabled GPUs
- GSWABE: faster GPU-accelerated sequence alignment with optimal alignment retrieval for short DNA sequences
- RabbitQC: high-speed scalable quality control for sequencing data
- Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data.
- Long read alignment based on maximal exact match seeds
- CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform
- ν-net
- CUSHAW Suite: Parallel and Efficient Algorithms for NGS Read Alignment
- Dedicated Bioinformatics Analysis Hardware
- Millimeter-Scale and Billion-Atom Reactive Force Field Simulation on Sunway Taihulight
- Next-generation sequencing: big data meets high performance computing
- Bio-ESMD: A Data Centric Implementation for Large-Scale Biological System Simulation on Sunway TaihuLight Supercomputer
- Redesigning and Optimizing UCSF DOCK3.7 on Sunway TaihuLight
- Deep learning in next-generation sequencing
- Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW
- Online Event Selection for Mu3e using GPUs
- Faster Segmented Sort on GPUs
- Convolutional neural network prediction of molecular properties for aerosol chemistry and health effects
- Parallel Programming
- RabbitFX: Efficient Framework for FASTA/Q File Parsing on Modern Multi-Core Platforms
- Bioinformatics
- SAUCE: A web application for interactive teaching and learning of parallel programming
- SAUCE: A Web-Based Automated Assessment Tool for Teaching Parallel Programming
- Scalable GPU-Enabled Creation of Three Dimensional Weather Fronts
- Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data
- CUSHAW2-GPU: Empowering Faster Gapped Short-Read Alignment Using GPU Computing
- CellMinerHCC: a microarray-based expression database for hepatocellular carcinoma cell lines
- A 3D Deep Neural Network for Liver Volumetry in 3T Contrast-Enhanced MRI
- CAREx: context-aware read extension of paired-end sequencing data
- From GPUs to AI and quantum: three waves of acceleration in bioinformatics
- CUDA-enabled hierarchical ward clustering of protein structures based on the nearest neighbour chain algorithm
- A computational method for studying the relation between alternative splicing and DNA methylation
- Parallelized clustering of protein structures on cuda-enabled gpus
- cuBool: bit-parallel Boolean Matrix Factorization on CUDA-enabled accelerators
- SPECTR: Scalable Parallel Short Read Error Correction on Multi-core and Many-core Architectures
- Accelerating metagenomic read classification on CUDA-enabled GPUs
- An adaptive grid implementation of DNA sequence alignment
- ParDRe: faster parallel duplicated reads removal tool for sequencing studies
- A hybrid architecture for bioinformatics
- Parallel Discovery of Transcription Factor Binding Sites.
- KPROC - An Instruction Systolic Architecture for Parallel Prefix Applications.
- SWAPHI: Smith-Waterman Protein Database Search on Xeon Phi Coprocessors
- LightSpMV: Faster CUDA-Compatible Sparse Matrix-Vector Multiplication Using Compressed Sparse Rows
- Pattern Recognition in Bioinformatics
- SWAPHI-LS: Smith-Waterman Algorithm on Xeon Phi Coprocessors for Long DNA Sequences
- parSRA: A framework for the parallel execution of short read aligners on compute clusters
- Development of distributed bioinformatics applications with GMP
- Massively parallel computation of atmospheric neutrino oscillations on CUDA-enabled accelerators
- Morphological hough transform on the instruction systolic array
- High-speed Multiple Sequence Alignment on a reconfigurable platform
- Bio-sequence database scanning on a GPU
- Deriving matrix of peptide-MHC interactions in diabetic mouse by genetic algorithm
- Multiple Sequence Alignment on an FPGA
- Biological Sequence Analysis with Hidden Markov Models on an FPGA.
- PUNAS: A Parallel Ungapped-Alignment-Featured Seed Verification Algorithm for Next-Generation Sequencing Read Alignment
- BGSA: a bit-parallel global sequence alignment toolkit for multi-core and many-core architectures
- Contemporary Computing - 4th International Conference, IC3 2011, Noida, India, August 8-10, 2011. Proceedings
- MetaCache: context-aware classification of metagenomic reads using minhashing
- Efficient Parallel Sort on AVX-512-Based Multi-Core and Many-Core Architectures
- AnyDSL: A Partial Evaluation Framework for Programming High-Performance Libraries
- GPU-ClustalW: Using Graphics Hardware to Accelerate Multiple Sequence Alignment
- Prediction of low coverage prone regions for Illumina sequencing projects using a support vector machine
- AFS: identification and quantification of species composition by metagenomic sequencing
- Neighbor-list-free Molecular Dynamics on Sunway TaihuLight Supercomputer
- CARE: Context-Aware Sequencing Read Error Correction
- Identification and quantification of meat product ingredients by whole-genome metagenomics (All-Food-Seq)
- CARE 2.0: reducing false-positive sequencing error corrections using machine learning
- AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation
- A big data approach to metagenomics for all-food-sequencing
- RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads
- AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation.
- Parallelized short read assembly of large genomes using de Bruijn graphs
- CUSHAW3 : sensitive and accurate base-space and color-space short-read alignment with hybrid seeding
- DySC : software for greedy clustering of 16S rRNA reads
- CUDASW++ 3.0 : accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions
- Parallel and scalable short-read alignment on multi-core clusters using UPC++
- HECTOR : a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data
- All-Food-Seq (AFS) : a quantifiable screen for species in biological samples by deep DNA sequencing
- Scalable clustering by iterative partitioning and point attractor representation
- Automated detection and classification of synoptic-scale fronts from atmospheric data grids
- Automated Identification and Location of Three Dimensional Atmospheric Frontal Systems
- CUDA-accelerated protein electrostatics in linear space
- FMapper: Scalable read mapper based on succinct hash index on SunWay TaihuLight
- AnyDSL: a partial evaluation framework for programming high-performance libraries
- Suffix Array Construction on Multi-GPU Systems
- Gossip: Efficient Communication Primitives for Multi-GPU Systems
- Graphical workflow system for modification calling by machine learning of reverse transcription signatures
- WarpCore: A Library for fast Hash Tables on GPUs.
- MetaCache-GPU: Ultra-Fast Metagenomic Classification
- Locality-sensitive hashing enables signal classification in high-throughput mass spectrometry raw data at scale
- Reconstruction of Low Energy Neutrino Events with GPUs at IceCube
- WarpCore: A Library for fast Hash Tables on GPUs
- General-purpose GPU hashing data structures and their application in accelerated genomics
- CorCast: A Distributed Architecture for Bayesian Epidemic Nowcasting and its Application to District-Level SARS-CoV-2 Infection Numbers in Germany
- RNACache: Fast Mapping of RNA-Seq Reads to Transcriptomes Using MinHashing
- MetaCache-GPU: Ultra-Fast Metagenomic Classification.
- MetaTransformer: deep metagenomic sequencing read classification using self-attention models
- Locality-sensitive hashing enables efficient and scalable signal classification in high-throughput mass spectrometry raw data
- RNACache: A scalable approach to rapid transcriptomic read mapping using locality sensitive hashing
- WarpDrive: Massively Parallel Hashing on Multi-GPU Nodes
- Speed and accuracy improvement of higher-order epistasis detection on CUDA-enabled GPUs
- Ultra-Fast Detection of Higher-Order Epistatic Interactions on GPUs
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