Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW
- Publikationstyp:
- Zeitschriftenaufsatz
- Metadaten:
-
- Autoren
- T Oliver
- B Schmidt
- D Nathan
- R Clemens
- D Maskell
- Autoren-URL
- https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=fis-test-1&SrcAuth=WosAPI&KeyUT=WOS:000231360600017&DestLinkType=FullRecord&DestApp=WOS_CPL
- DOI
- 10.1093/bioinformatics/bti508
- Externe Identifier
- Clarivate Analytics Document Solution ID: 957HJ
- PubMed Identifier: 15919726
- ISSN
- 1367-4803
- Ausgabe der Veröffentlichung
- 16
- Zeitschrift
- BIOINFORMATICS
- Paginierung
- 3431 - 3432
- Datum der Veröffentlichung
- 2005
- Status
- Published
- Titel
- Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW
- Sub types
- Article
- Ausgabe der Zeitschrift
- 21
Datenquelle: Web of Science (Lite)
- Andere Metadatenquellen:
-
- Autoren
- T Oliver
- B Schmidt
- D Nathan
- R Clemens
- D Maskell
- DOI
- 10.1093/bioinformatics/bti508
- eISSN
- 1460-2059
- ISSN
- 1367-4803
- Ausgabe der Veröffentlichung
- 16
- Zeitschrift
- Bioinformatics
- Sprache
- en
- Online publication date
- 2005
- Paginierung
- 3431 - 3432
- Datum der Veröffentlichung
- 2005
- Status
- Published
- Herausgeber
- Oxford University Press (OUP)
- Herausgeber URL
- http://dx.doi.org/10.1093/bioinformatics/bti508
- Datum der Datenerfassung
- 2017
- Titel
- Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW
- Ausgabe der Zeitschrift
- 21
Datenquelle: Crossref
- Abstract
- Aligning hundreds of sequences using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. We present a new approach to compute multiple sequence alignments in far shorter time using reconfigurable hardware. This results in an implementation of ClustalW with significant runtime savings on a standard off-the-shelf FPGA.
- Addresses
- School of Computer Engineering, Nanyang Technological University, Singapore. tim.oliver@pmail.ntu.edu.sg
- Autoren
- Tim Oliver
- Bertil Schmidt
- Darran Nathan
- Ralf Clemens
- Douglas Maskell
- DOI
- 10.1093/bioinformatics/bti508
- eISSN
- 1367-4811
- Externe Identifier
- PubMed Identifier: 15919726
- Open access
- false
- ISSN
- 1367-4803
- Ausgabe der Veröffentlichung
- 16
- Zeitschrift
- Bioinformatics (Oxford, England)
- Schlüsselwörter
- Equipment Design
- Equipment Failure Analysis
- Sequence Alignment
- Sequence Analysis, Protein
- Computers
- Signal Processing, Computer-Assisted
- Software
- User-Computer Interface
- Databases, Protein
- Sprache
- eng
- Medium
- Print-Electronic
- Online publication date
- 2005
- Paginierung
- 3431 - 3432
- Datum der Veröffentlichung
- 2005
- Status
- Published
- Datum der Datenerfassung
- 2005
- Titel
- Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW.
- Sub types
- Journal Article
- Ausgabe der Zeitschrift
- 21
Datenquelle: Europe PubMed Central
- Abstract
- Aligning hundreds of sequences using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. We present a new approach to compute multiple sequence alignments in far shorter time using reconfigurable hardware. This results in an implementation of ClustalW with significant runtime savings on a standard off-the-shelf FPGA.
- Autoren
- Tim Oliver
- Bertil Schmidt
- Darran Nathan
- Ralf Clemens
- Douglas Maskell
- Autoren-URL
- https://www.ncbi.nlm.nih.gov/pubmed/15919726
- DOI
- 10.1093/bioinformatics/bti508
- ISSN
- 1367-4803
- Ausgabe der Veröffentlichung
- 16
- Zeitschrift
- Bioinformatics
- Schlüsselwörter
- Computers
- Databases, Protein
- Equipment Design
- Equipment Failure Analysis
- Sequence Alignment
- Sequence Analysis, Protein
- Signal Processing, Computer-Assisted
- Software
- User-Computer Interface
- Sprache
- eng
- Country
- England
- Paginierung
- 3431 - 3432
- PII
- bti508
- Datum der Veröffentlichung
- 2005
- Status
- Published
- Datum, an dem der Datensatz öffentlich gemacht wurde
- 2005
- Titel
- Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW.
- Sub types
- Journal Article
- Ausgabe der Zeitschrift
- 21
Datenquelle: PubMed
- Autoren
- Timothy F Oliver
- Bertil Schmidt
- Darran Nathan
- Ralf Clemens
- Douglas L Maskell
- Zeitschrift
- Bioinform.
- Artikelnummer
- 16
- Paginierung
- 3431 - 3432
- Datum der Veröffentlichung
- 2005
- Titel
- Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW.
- Ausgabe der Zeitschrift
- 21
Datenquelle: DBLP
- Beziehungen:
- Eigentum von