Bioinformatik
- Beziehungen:
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- Exploring MEDLINE abstracts with XplorMed
- The features of polyglutamine regions depend on their evolutionary stability
- The latent geometry of the human protein interaction network
- Glutamine Codon Usage and polyQ Evolution in Primates Depend on the Q Stretch Length
- Inconsistencies over time in 5% of NetAffx probe-to-gene annotations
- The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism
- Ranking the whole MEDLINE database according to a large training set using text indexing
- Automated extraction of information in molecular biology
- A self-organizing model for the development of ocular dominance and orientation columns in the visual cortex
- Development of on-off and off-on receptive fields using a semistochastic model
- Computational approaches to discovering noncoding RNA
- PDBpaint, a visualization webservice to tag protein structures with sequence annotations
- Recognition of 2′-O-Methylated 3′-End of piRNA by the PAZ Domain of a Piwi Protein
- Pseudogenes as an alternative source of natural antisense transcripts
- Outer membrane pore protein prediction in mycobacteria using genomic comparison
- Identification of gene 3′ ends by automated EST cluster analysis
- ChIP on SNP-chip for genome-wide analysis of human histone H4 hyperacetylation
- Gene annotation from scientific literature using mappings between keyword systems
- Global analysis of bacterial transcription factors to predict cellular target processes
- Worldwide scientific publishing activity
- The GeneQuiz Web server: protein functional analysis through the Web
- Updated catalogue of homologues to human disease-related proteins in the yeast genome
- Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families
- Bioinformatics: From genome data to biological knowledge
- Structural study of the development of ocularity domains using a neural network model
- A neural network model for plasticity in adult striate cortex
- Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions
- Molecular Insights into Reprogramming-Initiation Events Mediated by the OSKM Gene Regulatory Network
- Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases
- BiasViz: visualization of amino acid biased regions in protein alignments
- MedlineRanker: flexible ranking of biomedical literature
- Detection of Alpha-Rod Protein Repeats Using a Neural Network and Application to Huntingtin
- Study of stem cell function using microarray experiments
- Re-annotating the Mycoplasma pneumoniae genome sequence:: adding value, function and reading frames
- Automated genome sequence analysis and annotation
- Computational space reduction and parallelization of a new clustering approach for large groups of sequences
- Characterization of new proteins found by analysis of short open reading frames from the full yeast genome
- NONUNIFORMITIES AND SUPERIMPOSED COMPETITION IN A MODEL OF AN AUTOCATALYTIC NETWORK FORMED BY ERROR-PRONE SELF-REPLICATIVE SPECIES
- STUDY OF AN ERROR-PRONE HYPERCYCLE FORMED FROM 2 KINETICALLY DISTINGUISHABLE SPECIES
- Development and application of a DNA microarray-based yeast two-hybrid system
- PU.1 Level-Directed Chromatin Structure Remodeling at the Irf8 Gene Drives Dendritic Cell Commitment
- NHC-gold compounds mediate immune suppression through induction of AHR-TGFβ1 signalling in vitro and in scurfy mice
- LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships
- Resident endothelial precursors in muscle, adipose, and dermis contribute to postnatal vasculogenesis
- Taxonomic colouring of phylogenetic trees of protein sequences
- Systematic association of genes to phenotypes by genome and literature mining
- Association of genes to genetically inherited diseases using data mining
- XplorMed: a tool for exploring MEDLINE abstracts
- Simulation of plasticity in the adult visual cortex
- NAIL -: Network Analysis Interface for Linking HMMER results
- Functional classes in the three domains of life
- Adaptation of protein surfaces to subcellular location
- Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function
- DNA sequencing and analysis of 130 kb from yeast chromosome XV
- PROTEINOTOPIC FEATURE MAPS
- COMPLEX DYNAMICS OF A CATALYTIC NETWORK HAVING FAULTY REPLICATION INTO ERROR-SPECIES
- PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries
- Preimplantation development regulatory pathway construction through a text-mining approach
- Protein expression profiling suggests relevance of noncanonical pathways in isolated pulmonary embolism
- DiseaseLinc: Disease Enrichment Analysis of Sets of Differentially Expressed LincRNAs
- Receptive field map development by anti-Hebbian learning
- Classification of protein families and detection of the determinant residues with an improved self-organizing map
- CHALLENGING TIMES FOR BIOINFORMATICS
- A MODEL OF AN AUTOCATALYTIC NETWORK FORMED BY ERROR-PRONE SELF-REPLICATIVE SPECIES
- Analysis of Huntington's Disease Modifiers Using the Hyperbolic Mapping of the Protein Interaction Network
- FASTA Herder: a web application to trim protein sequence sets
- Correcting for the study bias associated with protein-protein interaction measurements reveals differences between protein degree distributions from different cancer types
- Geometric characterisation of disease modules
- QiSampler: evaluation of scoring schemes for high-throughput datasets using a repetitive sampling strategy on gold standards
- Bioinformatics in theory and application – highlights of the 36th German Conference on Bioinformatics
- Detection of features predictive of microRNA targets by integration of network data
- The Dictionary of Genomics, Transcriptomics, and Proteomics
- Manifold learning and maximum likelihood estimation for hyperbolic network embedding
- Use of SNP-Arrays for ChIP Assays: Computational Aspects
- Dynamics of a Protein Interaction Network Associated to the Aggregation of polyQ-Expanded Ataxin-1
- Proteome-wide comparison between the amino acid composition of domains and linkers
- The nucleotide landscape of polyXY regions
- Structure-function relationships in protein homorepeats
- The Conservation of Low Complexity Regions in Bacterial Proteins Depends on the Pathogenicity of the Strain and Subcellular Location of the Protein
- A targeted proteomics investigation of the obesity paradox in venous thromboembolism
- PolyX2: Fast Detection of Homorepeats in Large Protein Datasets
- Evolutionary Study of Protein Short Tandem Repeats in Protein Families
- G2D: a tool for mining genes associated with disease
- Cardiac Alpha-Myosin (MYH6) Is the Predominant Sarcomeric Disease Gene for Familial Atrial Septal Defects
- Expression of protein elongation factor eEF1A2 predicts favorable outcome in breast cancer
- A Directed Protein Interaction Network for Investigating Intracellular Signal Transduction
- Computational disease gene identification: a concert of methods prioritizes type 2 diabetes and obesity candidate genes
- A combination of the F-box motif and kelch repeats defines a large Arabidopsis family of F-box proteins
- Between Interactions and Aggregates: The PolyQ Balance
- Context characterization of amino acid homorepeats using evolution, position, and order
- REP2: A Web Server to Detect Common Tandem Repeats in Protein Sequences
- A STRP-ed definition of Structured Tandem Repeats in Proteins
- ROMO1 Is an Essential Redox-Dependent Regulator of Mitochondrial Dynamics
- Comparison of ARM and HEAT protein repeats
- EVALUATION OF SECONDARY STRUCTURE OF PROTEINS FROM UV CIRCULAR-DICHROISM SPECTRA USING AN UNSUPERVISED LEARNING NEURAL-NETWORK
- Analysis of bacterial pangenomes reduces CRISPR dark matter and reveals strong association between membranome and CRISPR-Cas systems
- Identification of an Immunogenic Medulloblastoma-Specific Fusion Involving EPC2 and GULP1
- Analysis of RBP expression and binding sites identifies PTBP1 as a regulator of CD19 expression in B-ALL
- Reducing CRISPR dark matter reveals a strong association between the bacterial membranome and CRISPR-Cas systems
- Statistical guidelines for quality control of next-generation sequencing techniques
- CpG-Islands as Markers for Liquid Biopsies of Cancer Patients
- seqQscorer: automated quality control of next-generation sequencing data using machine learning
- Safety and Activity of the Combination of Ceritinib and Dasatinib in Osteosarcoma
- Batch effect detection and correction in RNA-seq data using machine-learning-based automated assessment of quality
- Structured Tandem Repeats in Protein Interactions
- Regulome
- Protein repeats
- Disentangling the complexity of low complexity proteins
- The protein structure context of polyQ regions
- uORFdb-a comprehensive literature database on eukaryotic uORF biology
- Update of the G2D tool for prioritization of gene candidates to inherited diseases
- Evaluation of annotation strategies using an entire genome sequence
- Homology-based method for identification of protein repeats using statistical significance estimates
- Gene function in early mouse embryonic stem cell differentiation
- Phase separating Rho: a widespread regulatory function of disordered regions in proteins revealed in bacteria
- Information extraction from full text scientific articles: Where are the keywords?
- Evolution of domain families
- DNMT1 Deficiency Impacts on Plasmacytoid Dendritic Cells in Homeostasis and Autoimmune Disease
- The pseudogenes of Mycobacterium leprae reveal the functional relevance of gene order within operons
- Linking genes to diseases: it's all in the data
- Prioritization of candidate disease genes for metabolic syndrome by computational analysis of its defining phenotypes
- Towards completion of the Earth's proteome
- Microtubule-associated AIR9 recognizes the cortical division site at preprophase and cell-plate insertion
- Protein repeats: Structures, functions, and evolution
- Emergence and evolution of the renin-angiotensin-aldosterone system
- A Transcriptional Roadmap to the Induction of Pluripotency in Somatic Cells
- HEAT REPEATS IN THE HUNTINGTONS-DISEASE PROTEIN
- Computing fuzzy associations for the analysis of biological literature
- Update on XplorMed:: a web server for exploring scientific literature
- The way we write - Country-specific variations of the English language in the biomedical literature
- Loss of fish actinotrichia proteins and the fin-to-limb transition
- Oct4 Targets Regulatory Nodes to Modulate Stem Cell Function
- CellFinder: a cell data repository
- SynSysNet: integration of experimental data on synaptic protein-protein interactions with drug-target relations
- HIPPIE: Integrating Protein Interaction Networks with Experiment Based Quality Scores
- The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text
- Protein repeats evolve and emerge in giant viruses
- Prediction of protein secondary structure from circular dichroism using theoretically derived spectra
- Identification of outer membrane proteins of Mycobacterium tuberculosis
- Mitochondrial carriers and pores: Key regulators of the mitochondrial apoptotic program?
- Genie: literature-based gene prioritization at multi genomic scale
- Cargo-selected transport from the mitochondria to peroxisomes is mediated by vesicular carriers
- Function and Evolution of Nematode RNAi Pathways
- DNA methylation protects hematopoietic stem cell multipotency from myeloerythroid restriction
- A mitochondria-K+ channel axis is suppressed in cancer and its normalization promotes apoptosis and inhibits cancer growth
- ACRATA: a novel electron transfer domain associated to apoptosis and cancer
- Mitochondrial vesicles: an ancient process providing new links to peroxisomes
- Functional Tuning of Intrinsically Disordered Regions in Human Proteins by Composition Bias
- Regions with two amino acids in protein sequences: A step forward from homorepeats into the low complexity landscape
- Comparative genomics identification of a novel set of temporally regulated hedgehog target genes in the retina
- Aggregation of polyQ-extended proteins is promoted by interaction with their natural coiled-coil partners
- MAGA: A Supervised Method to Detect Motifs From Annotated Groups in Alignments
- Identification of Human Proteins That Modify Misfolding and Proteotoxicity of Pathogenic Ataxin-1
- Paired SAGE-microarray Expression Data Sets Reveal Antisense Transcripts Differentially Expressed in Embryonic Stem Cell Differentiation
- Short tandem repeats in the inhibitory domain of the mineralocorticoid receptor: prediction of a β-solenoid structure
- Peer2ref: a peer-reviewer finding web tool that uses author disambiguation
- [Front matter]
- Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
- Mutually exclusive signaling signatures define the hepatic and pancreatic progenitor cell lineage divergence
- Mining the literature: new methods to exploit keyword profiles
- A method for cell type marker discovery by high-throughput gene expression analysis of mixed cell populations
- Repeatability in protein sequences
- Computational identification of cell-specific variable regions in ChIP-seq data
- Concerted down-regulation of immune-system related genes predicts metastasis in colorectal carcinoma
- A novel approach for protein subcellular location prediction using amino acid exposure
- Assessment of computational methods for the analysis of single-cell ATAC-seq data
- Evolution and function of CAG/polyglutamine repeats in protein-protein interaction networks
- Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
- Using cited references to improve the retrieval of related biomedical documents
- Functional and Genomic Analyses of Alpha-Solenoid Proteins
- Human LIGIV is synthetically lethal with the loss of Rad54B-dependent recombination and is required for certain chromosome fusion events induced by telomere dysfunction
- PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins
- A role for GPx3 in activity of normal and leukemia stem cells
- Loss of Lrp2 in Zebrafish Disrupts Pronephric Tubular Clearance But Not Forebrain Development
- Recent developments in StemBase: a tool to study gene expression in human and murine stem cells
- Integration of Expressed Sequence Tag Data Flanking Predicted RNA Secondary Structures Facilitates Novel Non-Coding RNA Discovery
- A Customized Class of Functions for Modeling and Clustering Gene Expression Profiles in Embryonic Stem Cells
- Functional evidence of post-transcriptional regulation by pseudogenes
- Identification of novel stem cell markers using gap analysis of gene expression data
- Evolving research trends in bioinformatics
- An abnormal mitochondrial-hypoxia inducible factor-1α-Kv channel pathway disrupts oxygen sensing and triggers pulmonary arterial hypertension in fawn hooded rats -: Similarities to human pulmonary arterial hypertension
- The FTO (fat mass and obesity associated) gene codes for a novel member of the non-heme dioxygenase superfamily
- Amplification of the Gene Ontology annotation of Affymetrix probe sets
- The SUMO protease SENP5 is required to maintain mitochondrial morphology and function
- Avoided motifs: short amino acid strings missing from protein datasets
- Traitpedia: a collaborative effort to gather species traits
- CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats
- Fungal Smn and Spf30 homologues are mainly present in filamentous fungi and genomes with many introns: Implications for spinal muscular atrophy
- Mpg2 interacts and cooperates with Mpg1 to maintain yeast glycosylation
- Toward completion of the Earth's proteome: an update a decade later
- Large expert-curated database for benchmarking document similarity detection in biomedical literature search
- A novel approach to investigate the evolution of structured tandem repeat protein families by exon duplication
- Automated selection of homologs to track the evolutionary history of proteins
- orthoFind Facilitates the Discovery of Homologous and Orthologous Proteins
- dAPE: a web server to detect homorepeats and follow their evolution
- Protein-protein interactions can be predicted using coiled coil co-evolution patterns
- FastaHerder2: Four Ways to Research Protein Function and Evolution with Clustering and Clustered Databases
- The Role of Low Complexity Regions in Protein Interaction Modes: An Illustration in Huntingtin
- The 18S ribosomal RNA m6A methyltransferase Mettl5 is required for normal walking behavior in Drosophila
- Assessing the low complexity of protein sequences via the low complexity triangle
- The importance of definitions in the study of polyQ regions: A tale of thresholds, impurities and sequence context
- Flanking Regions Determine the Structure of the Poly-Glutamine in Huntingtin through Mechanisms Common among Glutamine-Rich Human Proteins
- Evolutionary Study of Disorder in Protein Sequences
- AnABlast: Re-searching for Protein-Coding Sequences in Genomic Regions
- The soluble intracellular domain of megalin does not affect renal proximal tubular function in vivo
- Armadillo Motifs Involved in Vesicular Transport
- Transcriptional profiling of skeletal muscle reveals factors that are necessary to maintain satellite cell integrity during ageing
- K2D2: estimation of protein secondary structure from circular dichroism spectra
- Genes to Diseases (G2D) Computational Method to Identify Asthma Candidate Genes
- Periostin shows increased evolutionary plasticity in its alternatively spliced region
- Assessment of computational methods for the analysis of single-cell ATAC-seq data
- TAF-ChIP: an ultra-low input approach for genome-wide chromatin immunoprecipitation assay
- Annotation and Analysis of 3902 Odorant Receptor Protein Sequences from 21 Insect Species Provide Insights into the Evolution of Odorant Receptor Gene Families in Solitary and Social Insects
- Low Complexity Induces Structure in Protein Regions Predicted as Intrinsically Disordered
- Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets
- Evolution-guided evaluation of the inverted terminal repeats of the synthetic transposon Sleeping Beauty
- CABRA: cluster and annotate BLAST results algorithm
- Reading the evolution of compartmentalization in the ribosome assembly toolbox : the YRG protein family
- Efficient embedding of complex networks to hyperbolic space via their Laplacian
- m6A modulates neuronal functions and sex determination in Drosophila
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