Analysis of DNA sequence variation within marine species using Beta-coalescents
- Publication type:
- Journal article
- Metadata:
-
- Autoren
- Matthias Steinruecken
- Matthias Birkner
- Jochen Blath
- Autoren-URL
- https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=fis-test-1&SrcAuth=WosAPI&KeyUT=WOS:000322688800003&DestLinkType=FullRecord&DestApp=WOS_CPL
- DOI
- 10.1016/j.tpb.2013.01.007
- eISSN
- 1096-0325
- Externe Identifier
- Clarivate Analytics Document Solution ID: 195FX
- PubMed Identifier: 23376155
- ISSN
- 0040-5809
- Zeitschrift
- THEORETICAL POPULATION BIOLOGY
- Schlüsselwörter
- Beta-coalescents
- Inference of mutation rates
- Time to the most recent common ancestor
- Hedgecock sweepstakes
- Population genetics
- Paginierung
- 15 - 24
- Datum der Veröffentlichung
- 2013
- Status
- Published
- Titel
- Analysis of DNA sequence variation within marine species using Beta-coalescents
- Sub types
- Article
- Ausgabe der Zeitschrift
- 87
Data source: Web of Science (Lite)
- Other metadata sources:
-
- Autoren
- Matthias Steinrücken
- Matthias Birkner
- Jochen Blath
- DOI
- 10.1016/j.tpb.2013.01.007
- ISSN
- 0040-5809
- Zeitschrift
- Theoretical Population Biology
- Sprache
- en
- Paginierung
- 15 - 24
- Datum der Veröffentlichung
- 2013
- Status
- Published
- Herausgeber
- Elsevier BV
- Herausgeber URL
- http://dx.doi.org/10.1016/j.tpb.2013.01.007
- Datum der Datenerfassung
- 2022
- Titel
- Analysis of DNA sequence variation within marine species using Beta-coalescents
- Ausgabe der Zeitschrift
- 87
Data source: Crossref
- Abstract
- We apply recently developed inference methods based on general coalescent processes to DNA sequence data obtained from various marine species. Several of these species are believed to exhibit so-called shallow gene genealogies, potentially due to extreme reproductive behaviour, e.g. via Hedgecock's "reproduction sweepstakes". Besides the data analysis, in particular the inference of mutation rates and the estimation of the (real) time to the most recent common ancestor, we briefly address the question whether the genealogies might be adequately described by so-called Beta-coalescents (as opposed to Kingman's coalescent), allowing multiple mergers of genealogies. The choice of the underlying coalescent model for the genealogy has drastic implications for the estimation of the above quantities, in particular the real-time embedding of the genealogy.
- Addresses
- Department of Statistics, University of California, 367 Evans Hall MC 3860, Berkeley, CA 94720-3860, USA. steinrue@stat.berkeley.edu
- Autoren
- Matthias Steinrücken
- Matthias Birkner
- Jochen Blath
- DOI
- 10.1016/j.tpb.2013.01.007
- eISSN
- 1096-0325
- Externe Identifier
- PubMed Identifier: 23376155
- PubMed Central ID: PMC3664663
- Funding acknowledgements
- NIGMS NIH HHS: R01-GM094402
- NIGMS NIH HHS: R01 GM094402
- Open access
- false
- ISSN
- 0040-5809
- Zeitschrift
- Theoretical population biology
- Schlüsselwörter
- Animals
- Sequence Analysis, DNA
- Marine Biology
- Ostreidae
- Sprache
- eng
- Medium
- Print-Electronic
- Online publication date
- 2013
- Paginierung
- 15 - 24
- Datum der Veröffentlichung
- 2013
- Status
- Published
- Datum der Datenerfassung
- 2013
- Titel
- Analysis of DNA sequence variation within marine species using Beta-coalescents.
- Sub types
- Research Support, Non-U.S. Gov't
- research-article
- Journal Article
- Research Support, N.I.H., Extramural
- Ausgabe der Zeitschrift
- 87
Files
https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23376155/pdf/?tool=EBI https://europepmc.org/articles/PMC3664663?pdf=render
Data source: Europe PubMed Central
- Abstract
- We apply recently developed inference methods based on general coalescent processes to DNA sequence data obtained from various marine species. Several of these species are believed to exhibit so-called shallow gene genealogies, potentially due to extreme reproductive behaviour, e.g. via Hedgecock's "reproduction sweepstakes". Besides the data analysis, in particular the inference of mutation rates and the estimation of the (real) time to the most recent common ancestor, we briefly address the question whether the genealogies might be adequately described by so-called Beta-coalescents (as opposed to Kingman's coalescent), allowing multiple mergers of genealogies. The choice of the underlying coalescent model for the genealogy has drastic implications for the estimation of the above quantities, in particular the real-time embedding of the genealogy.
- Autoren
- Matthias Steinrücken
- Matthias Birkner
- Jochen Blath
- Autoren-URL
- https://www.ncbi.nlm.nih.gov/pubmed/23376155
- DOI
- 10.1016/j.tpb.2013.01.007
- eISSN
- 1096-0325
- Externe Identifier
- NIH Manuscript Submission ID: NIHMS420699
- PubMed Central ID: PMC3664663
- Funding acknowledgements
- NIGMS NIH HHS: R01 GM094402
- NIGMS NIH HHS: R01-GM094402
- Zeitschrift
- Theor Popul Biol
- Schlüsselwörter
- Beta-coalescents
- Hedgecock sweepstakes
- Inference of mutation rates
- Population genetics
- Time to the most recent common ancestor
- Animals
- Marine Biology
- Ostreidae
- Sequence Analysis, DNA
- Sprache
- eng
- Country
- United States
- Paginierung
- 15 - 24
- PII
- S0040-5809(12)00105-0
- Datum der Veröffentlichung
- 2013
- Status
- Published
- Datum, an dem der Datensatz öffentlich gemacht wurde
- 2014
- Titel
- Analysis of DNA sequence variation within marine species using Beta-coalescents.
- Sub types
- Journal Article
- Research Support, N.I.H., Extramural
- Research Support, Non-U.S. Gov't
- Ausgabe der Zeitschrift
- 87
Data source: PubMed
- Abstract
- We apply recently developed inference methods based on general coalescent processes to DNA sequence data obtained from various marine species. Several of these species are believed to exhibit so-called shallow gene genealogies, potentially due to extreme reproductive behaviour, e.g. via Hedgecock's "reproduction sweepstakes". Besides the data analysis, in particular the inference of mutation rates and the estimation of the (real) time to the most recent common ancestor, we briefly address the question whether the genealogies might be adequately described by so-called Beta coalescents (as opposed to Kingman's coalescent), allowing multiple mergers of genealogies. The choice of the underlying coalescent model for the genealogy has drastic implications for the estimation of the above quantities, in particular the real-time embedding of the genealogy.
- Autoren
- Matthias Steinrücken
- Matthias Birkner
- Jochen Blath
- Autoren-URL
- http://arxiv.org/abs/1209.0813v2
- Schlüsselwörter
- q-bio.PE
- q-bio.PE
- math.PR
- 62F99 (Primary) 62P10, 92D10, 92D20 (Secondary)
- Notes
- 15 pages, 16 figures
- Datum der Veröffentlichung
- 2012
- Datum der Datenerfassung
- 2012
- Datum, an dem der Datensatz öffentlich gemacht wurde
- 2012
- Titel
- Analysis of DNA sequence variation within marine species using Beta-coalescents
Files
1209.0813v2.pdf
Data source: arXiv
- Beziehungen:
- Property of