An improved high-quality genome assembly and annotation of Tibetan hulless barley
- Publication type:
- Journal article
- Metadata:
-
- Autoren
- Xingquan Zeng
- Tong Xu
- Zhihao Ling
- Yulin Wang
- Xiangfeng Li
- Shuqing Xu
- Qijun Xu
- Sang Zha
- Wangmu Qimei
- Yuzhen Basang
- Jiabu Dunzhu
- Mingzhai Yu
- Hongjun Yuan
- Tashi Nyima
- Autoren-URL
- https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=fis-test-1&SrcAuth=WosAPI&KeyUT=WOS:000533426000001&DestLinkType=FullRecord&DestApp=WOS_CPL
- DOI
- 10.1038/s41597-020-0480-0
- eISSN
- 2052-4463
- Externe Identifier
- Clarivate Analytics Document Solution ID: LO1ZM
- PubMed Identifier: 32385314
- Ausgabe der Veröffentlichung
- 1
- Zeitschrift
- SCIENTIFIC DATA
- Artikelnummer
- ARTN 139
- Datum der Veröffentlichung
- 2020
- Status
- Published
- Titel
- An improved high-quality genome assembly and annotation of Tibetan hulless barley
- Sub types
- Article
- Data Paper
- Ausgabe der Zeitschrift
- 7
Data source: Web of Science (Lite)
- Other metadata sources:
-
- Abstract
- <jats:title>Abstract</jats:title><jats:p>Hulless barley (<jats:italic>Hordeum vulgare</jats:italic> L. var. <jats:italic>nudum</jats:italic>) is a barley variety that has loose husk cover of the caryopses. Because of the ease in processing and edibility, hulless barley has been locally cultivated and used as human food. For example, in Tibetan Plateau, hulless barley is the staple food for human and essential livestock feed. Although the draft genome of hulless barley has been sequenced, the assembly remains fragmented. Here, we reported an improved high-quality assembly and annotation of the Tibetan hulless barley genome using more than 67X PacBio long-reads. The N50 contig length of the new assembly is at least more than 19 times larger than other available barley assemblies. The new genome assembly also showed high gene completeness and high collinearity of genome synteny with the previously reported barley genome. The new genome assembly and annotation will not only remove major hurdles in genetic analysis and breeding of hulless barley, but will also serve as a key resource for studying barley genomics and genetics.</jats:p>
- Autoren
- Xingquan Zeng
- Tong Xu
- Zhihao Ling
- Yulin Wang
- Xiangfeng Li
- Shuqing Xu
- Qijun Xu
- Sang Zha
- Wangmu Qimei
- Yuzhen Basang
- Jiabu Dunzhu
- Mingzhai Yu
- Hongjun Yuan
- Tashi Nyima
- DOI
- 10.1038/s41597-020-0480-0
- eISSN
- 2052-4463
- Ausgabe der Veröffentlichung
- 1
- Zeitschrift
- Scientific Data
- Sprache
- en
- Artikelnummer
- 139
- Online publication date
- 2020
- Status
- Published online
- Herausgeber
- Springer Science and Business Media LLC
- Herausgeber URL
- http://dx.doi.org/10.1038/s41597-020-0480-0
- Datum der Datenerfassung
- 2022
- Titel
- An improved high-quality genome assembly and annotation of Tibetan hulless barley
- Ausgabe der Zeitschrift
- 7
Data source: Crossref
- Abstract
- Hulless barley (Hordeum vulgare L. var. nudum) is a barley variety that has loose husk cover of the caryopses. Because of the ease in processing and edibility, hulless barley has been locally cultivated and used as human food. For example, in Tibetan Plateau, hulless barley is the staple food for human and essential livestock feed. Although the draft genome of hulless barley has been sequenced, the assembly remains fragmented. Here, we reported an improved high-quality assembly and annotation of the Tibetan hulless barley genome using more than 67X PacBio long-reads. The N50 contig length of the new assembly is at least more than 19 times larger than other available barley assemblies. The new genome assembly also showed high gene completeness and high collinearity of genome synteny with the previously reported barley genome. The new genome assembly and annotation will not only remove major hurdles in genetic analysis and breeding of hulless barley, but will also serve as a key resource for studying barley genomics and genetics.
- Addresses
- State Key Laboratory of Hulless Barley and Yak Germplasm Resources and Genetic Improvement, Lhasa, Tibet, 850002, China.
- Autoren
- Xingquan Zeng
- Tong Xu
- Zhihao Ling
- Yulin Wang
- Xiangfeng Li
- Shuqing Xu
- Qijun Xu
- Sang Zha
- Wangmu Qimei
- Yuzhen Basang
- Jiabu Dunzhu
- Mingzhai Yu
- Hongjun Yuan
- Tashi Nyima
- DOI
- 10.1038/s41597-020-0480-0
- eISSN
- 2052-4463
- Externe Identifier
- PubMed Identifier: 32385314
- PubMed Central ID: PMC7210891
- Open access
- true
- ISSN
- 2052-4463
- Ausgabe der Veröffentlichung
- 1
- Zeitschrift
- Scientific data
- Schlüsselwörter
- Hordeum
- Genome, Plant
- Tibet
- Molecular Sequence Annotation
- Sprache
- eng
- Medium
- Electronic
- Online publication date
- 2020
- Open access status
- Open Access
- Paginierung
- 139
- Datum der Veröffentlichung
- 2020
- Status
- Published
- Publisher licence
- CC BY
- Datum der Datenerfassung
- 2020
- Titel
- An improved high-quality genome assembly and annotation of Tibetan hulless barley.
- Sub types
- Research Support, Non-U.S. Gov't
- Dataset
- data-paper
- Journal Article
- Ausgabe der Zeitschrift
- 7
Files
https://www.nature.com/articles/s41597-020-0480-0.pdf https://europepmc.org/articles/PMC7210891?pdf=render
Data source: Europe PubMed Central
- Abstract
- Hulless barley (Hordeum vulgare L. var. nudum) is a barley variety that has loose husk cover of the caryopses. Because of the ease in processing and edibility, hulless barley has been locally cultivated and used as human food. For example, in Tibetan Plateau, hulless barley is the staple food for human and essential livestock feed. Although the draft genome of hulless barley has been sequenced, the assembly remains fragmented. Here, we reported an improved high-quality assembly and annotation of the Tibetan hulless barley genome using more than 67X PacBio long-reads. The N50 contig length of the new assembly is at least more than 19 times larger than other available barley assemblies. The new genome assembly also showed high gene completeness and high collinearity of genome synteny with the previously reported barley genome. The new genome assembly and annotation will not only remove major hurdles in genetic analysis and breeding of hulless barley, but will also serve as a key resource for studying barley genomics and genetics.
- Date of acceptance
- 2020
- Autoren
- Xingquan Zeng
- Tong Xu
- Zhihao Ling
- Yulin Wang
- Xiangfeng Li
- Shuqing Xu
- Qijun Xu
- Sang Zha
- Wangmu Qimei
- Yuzhen Basang
- Jiabu Dunzhu
- Mingzhai Yu
- Hongjun Yuan
- Tashi Nyima
- Autoren-URL
- https://www.ncbi.nlm.nih.gov/pubmed/32385314
- DOI
- 10.1038/s41597-020-0480-0
- eISSN
- 2052-4463
- Externe Identifier
- PubMed Central ID: PMC7210891
- Ausgabe der Veröffentlichung
- 1
- Zeitschrift
- Sci Data
- Schlüsselwörter
- Genome, Plant
- Hordeum
- Molecular Sequence Annotation
- Tibet
- Sprache
- eng
- Country
- England
- Paginierung
- 139
- PII
- 10.1038/s41597-020-0480-0
- Datum der Veröffentlichung
- 2020
- Status
- Published online
- Datum, an dem der Datensatz öffentlich gemacht wurde
- 2020
- Titel
- An improved high-quality genome assembly and annotation of Tibetan hulless barley.
- Sub types
- Dataset
- Journal Article
- Research Support, Non-U.S. Gov't
- Ausgabe der Zeitschrift
- 7
Data source: PubMed
- Beziehungen:
- Property of