The plastomes of Astrocaryum aculeatum G. Mey. and A. murumuru Mart. show a flip-flop recombination between two short inverted repeats
- Publikationstyp:
- Zeitschriftenaufsatz
- Metadaten:
-
- Autoren
- Amanda de Santana Lopes
- Tulio Gomes Pacheco
- Odyone Nascimento da Silva
- Leonardo Magalhaes Cruz
- Eduardo Balsanelli
- Emanuel Maltempi de Souza
- Fabio de Oliveira Pedrosa
- Marcelo Rogalski
- Autoren-URL
- https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=fis-test-1&SrcAuth=WosAPI&KeyUT=WOS:000487049200014&DestLinkType=FullRecord&DestApp=WOS_CPL
- DOI
- 10.1007/s00425-019-03217-z
- eISSN
- 1432-2048
- Externe Identifier
- Clarivate Analytics Document Solution ID: IZ4JD
- PubMed Identifier: 31222493
- ISSN
- 0032-0935
- Ausgabe der Veröffentlichung
- 4
- Zeitschrift
- PLANTA
- Schlüsselwörter
- Palm tree
- Horizontal gene transfer
- Plastome evolution
- Plastid SSRs
- Plastid SNPs
- Paginierung
- 1229 - 1246
- Datum der Veröffentlichung
- 2019
- Status
- Published
- Titel
- The plastomes of <i>Astrocaryum aculeatum</i> G. Mey. and <i>A. murumuru</i> Mart. show a flip-flop recombination between two short inverted repeats
- Sub types
- Article
- Ausgabe der Zeitschrift
- 250
Datenquelle: Web of Science (Lite)
- Andere Metadatenquellen:
-
- Autoren
- Amanda de Santana Lopes
- Túlio Gomes Pacheco
- Odyone Nascimento da Silva
- Leonardo Magalhães Cruz
- Eduardo Balsanelli
- Emanuel Maltempi de Souza
- Fábio de Oliveira Pedrosa
- Marcelo Rogalski
- DOI
- 10.1007/s00425-019-03217-z
- eISSN
- 1432-2048
- ISSN
- 0032-0935
- Ausgabe der Veröffentlichung
- 4
- Zeitschrift
- Planta
- Sprache
- en
- Online publication date
- 2019
- Paginierung
- 1229 - 1246
- Datum der Veröffentlichung
- 2019
- Status
- Published
- Herausgeber
- Springer Science and Business Media LLC
- Herausgeber URL
- http://dx.doi.org/10.1007/s00425-019-03217-z
- Datum der Datenerfassung
- 2023
- Titel
- The plastomes of Astrocaryum aculeatum G. Mey. and A. murumuru Mart. show a flip-flop recombination between two short inverted repeats
- Ausgabe der Zeitschrift
- 250
Datenquelle: Crossref
- Abstract
- <h4>Main conclusion</h4>The plastomes of Astrocaryum murumuru and A. aculeatum revealed a lineage-specific structural feature originated by flip-flop recombination, non-synonymous substitutions in conserved genes and several molecular markers. Astrocaryum murumuru Mart. and A. aculeatum G.Mey. are two palm species of Amazon forest that are economically important as source of food, oil and raw material for several applications. Genetic studies aiming to establish strategies for conservation and domestication of both species are still in the beginning given that the exploitation is mostly by extractive activity. The identification and characterization of molecular markers are essential to assess the genetic diversity of natural populations of both species. Therefore, we sequenced and characterized in detail the plastome of both species. We compared both species and identified 32 polymorphic SSR loci, 150 SNPs, 46 indels and eight hotspots of nucleotide diversity. Additionally, we reported a specific RNA editing site found in the ccsA gene, which is exclusive to A. murumuru. Moreover, the structural analysis in the plastomes of both species revealed a 4.6-kb inversion encompassing a set of genes involved in chlororespiration and plastid translation. This 4.6-kb inversion is a lineage-specific structural feature of the genus Astrocaryum originated by flip-flop recombination between two short inverted repeats. Furthermore, our phylogenetic analysis using whole plastomes of 39 Arecaceae species placed the Astrocaryum species sister to Acrocomia within the tribe Cocoseae. Finally, our data indicated substantial changes in the plastome structure and sequence of both species of the genus Astrocaryum, bringing new molecular markers, several structural and evolving features, which can be applied in several areas such as genetic, evolution, breeding, phylogeny and conservation strategies for both species.
- Addresses
- Laboratório de Fisiologia Molecular de Plantas, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, Brazil.
- Autoren
- Amanda de Santana Lopes
- Túlio Gomes Pacheco
- Odyone Nascimento da Silva
- Leonardo Magalhães Cruz
- Eduardo Balsanelli
- Emanuel Maltempi de Souza
- Fábio de Oliveira Pedrosa
- Marcelo Rogalski
- DOI
- 10.1007/s00425-019-03217-z
- eISSN
- 1432-2048
- Externe Identifier
- PubMed Identifier: 31222493
- Funding acknowledgements
- CNPq: CNPq
- CNPq: Grant 459698/2014-1
- Open access
- false
- ISSN
- 0032-0935
- Ausgabe der Veröffentlichung
- 4
- Zeitschrift
- Planta
- Schlüsselwörter
- Plastids
- Arecaceae
- Evolution, Molecular
- Phylogeny
- RNA Editing
- Recombination, Genetic
- Inverted Repeat Sequences
- Sprache
- eng
- Medium
- Print-Electronic
- Online publication date
- 2019
- Paginierung
- 1229 - 1246
- Datum der Veröffentlichung
- 2019
- Status
- Published
- Datum der Datenerfassung
- 2019
- Titel
- The plastomes of Astrocaryum aculeatum G. Mey. and A. murumuru Mart. show a flip-flop recombination between two short inverted repeats.
- Sub types
- Journal Article
- Ausgabe der Zeitschrift
- 250
Datenquelle: Europe PubMed Central
- Abstract
- The plastomes of Astrocaryum murumuru and A. aculeatum revealed a lineage-specific structural feature originated by flip-flop recombination, non-synonymous substitutions in conserved genes and several molecular markers. Astrocaryum murumuru Mart. and A. aculeatum G.Mey. are two palm species of Amazon forest that are economically important as source of food, oil and raw material for several applications. Genetic studies aiming to establish strategies for conservation and domestication of both species are still in the beginning given that the exploitation is mostly by extractive activity. The identification and characterization of molecular markers are essential to assess the genetic diversity of natural populations of both species. Therefore, we sequenced and characterized in detail the plastome of both species. We compared both species and identified 32 polymorphic SSR loci, 150 SNPs, 46 indels and eight hotspots of nucleotide diversity. Additionally, we reported a specific RNA editing site found in the ccsA gene, which is exclusive to A. murumuru. Moreover, the structural analysis in the plastomes of both species revealed a 4.6-kb inversion encompassing a set of genes involved in chlororespiration and plastid translation. This 4.6-kb inversion is a lineage-specific structural feature of the genus Astrocaryum originated by flip-flop recombination between two short inverted repeats. Furthermore, our phylogenetic analysis using whole plastomes of 39 Arecaceae species placed the Astrocaryum species sister to Acrocomia within the tribe Cocoseae. Finally, our data indicated substantial changes in the plastome structure and sequence of both species of the genus Astrocaryum, bringing new molecular markers, several structural and evolving features, which can be applied in several areas such as genetic, evolution, breeding, phylogeny and conservation strategies for both species.
- Date of acceptance
- 2019
- Autoren
- Amanda de Santana Lopes
- Túlio Gomes Pacheco
- Odyone Nascimento da Silva
- Leonardo Magalhães Cruz
- Eduardo Balsanelli
- Emanuel Maltempi de Souza
- Fábio de Oliveira Pedrosa
- Marcelo Rogalski
- Autoren-URL
- https://www.ncbi.nlm.nih.gov/pubmed/31222493
- DOI
- 10.1007/s00425-019-03217-z
- eISSN
- 1432-2048
- Funding acknowledgements
- CNPq: CNPq
- CNPq: Grant 459698/2014-1
- Ausgabe der Veröffentlichung
- 4
- Zeitschrift
- Planta
- Schlüsselwörter
- Horizontal gene transfer
- Palm tree
- Plastid SNPs
- Plastid SSRs
- Plastome evolution
- Arecaceae
- Evolution, Molecular
- Inverted Repeat Sequences
- Phylogeny
- Plastids
- RNA Editing
- Recombination, Genetic
- Sprache
- eng
- Country
- Germany
- Paginierung
- 1229 - 1246
- PII
- 10.1007/s00425-019-03217-z
- Datum der Veröffentlichung
- 2019
- Status
- Published
- Datum, an dem der Datensatz öffentlich gemacht wurde
- 2019
- Titel
- The plastomes of Astrocaryum aculeatum G. Mey. and A. murumuru Mart. show a flip-flop recombination between two short inverted repeats.
- Sub types
- Journal Article
- Ausgabe der Zeitschrift
- 250
Datenquelle: PubMed
- Beziehungen:
- Eigentum von