PolyX2: Fast Detection of Homorepeats in Large Protein Datasets
- Publikationstyp:
- Zeitschriftenaufsatz
- Metadaten:
-
- Autoren
- Pablo Mier
- Miguel A Andrade-Navarro
- Autoren-URL
- https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=fis-test-1&SrcAuth=WosAPI&KeyUT=WOS:000803239100001&DestLinkType=FullRecord&DestApp=WOS_CPL
- DOI
- 10.3390/genes13050758
- eISSN
- 2073-4425
- Externe Identifier
- Clarivate Analytics Document Solution ID: 1R2XX
- PubMed Identifier: 35627143
- Ausgabe der Veröffentlichung
- 5
- Zeitschrift
- GENES
- Schlüsselwörter
- low-complexity regions
- homorepeats
- web tool
- Artikelnummer
- ARTN 758
- Datum der Veröffentlichung
- 2022
- Status
- Published
- Titel
- PolyX2: Fast Detection of Homorepeats in Large Protein Datasets
- Sub types
- Article
- Ausgabe der Zeitschrift
- 13
Datenquelle: Web of Science (Lite)
- Andere Metadatenquellen:
-
- Abstract
- <jats:p>Homorepeat sequences, consecutive runs of identical amino acids, are prevalent in eukaryotic proteins. It has become necessary to annotate and evaluate this feature in entire proteomes. The definition of what constitutes a homorepeat is not fixed, and different research approaches may require different definitions; therefore, flexible approaches to analyze homorepeats in complete proteomes are needed. Here, we present polyX2, a fast, simple but tunable script to scan protein datasets for all possible homorepeats. The user can modify the length of the window to scan, the minimum number of identical residues that must be found in the window, and the types of homorepeats to be found.</jats:p>
- Autoren
- Pablo Mier
- Miguel A Andrade-Navarro
- DOI
- 10.3390/genes13050758
- eISSN
- 2073-4425
- Ausgabe der Veröffentlichung
- 5
- Zeitschrift
- Genes
- Sprache
- en
- Online publication date
- 2022
- Paginierung
- 758 - 758
- Status
- Published online
- Herausgeber
- MDPI AG
- Herausgeber URL
- http://dx.doi.org/10.3390/genes13050758
- Datum der Datenerfassung
- 2022
- Titel
- PolyX2: Fast Detection of Homorepeats in Large Protein Datasets
- Ausgabe der Zeitschrift
- 13
Datenquelle: Crossref
- Abstract
- Homorepeat sequences, consecutive runs of identical amino acids, are prevalent in eukaryotic proteins. It has become necessary to annotate and evaluate this feature in entire proteomes. The definition of what constitutes a homorepeat is not fixed, and different research approaches may require different definitions; therefore, flexible approaches to analyze homorepeats in complete proteomes are needed. Here, we present polyX2, a fast, simple but tunable script to scan protein datasets for all possible homorepeats. The user can modify the length of the window to scan, the minimum number of identical residues that must be found in the window, and the types of homorepeats to be found.
- Addresses
- Institute of Organismic and Molecular Evolution, Johannes Gutenberg University Mainz, 55128 Mainz, Germany.
- Autoren
- Pablo Mier
- Miguel A Andrade-Navarro
- DOI
- 10.3390/genes13050758
- eISSN
- 2073-4425
- Externe Identifier
- PubMed Identifier: 35627143
- PubMed Central ID: PMC9141109
- Open access
- true
- ISSN
- 2073-4425
- Ausgabe der Veröffentlichung
- 5
- Zeitschrift
- Genes
- Schlüsselwörter
- Eukaryotic Cells
- Amino Acids
- Proteome
- Repetitive Sequences, Amino Acid
- Eukaryota
- Sprache
- eng
- Medium
- Electronic
- Online publication date
- 2022
- Open access status
- Open Access
- Paginierung
- 758
- Datum der Veröffentlichung
- 2022
- Status
- Published
- Publisher licence
- CC BY
- Datum der Datenerfassung
- 2022
- Titel
- PolyX2: Fast Detection of Homorepeats in Large Protein Datasets.
- Sub types
- brief-report
- Journal Article
- Ausgabe der Zeitschrift
- 13
Files
https://www.mdpi.com/2073-4425/13/5/758/pdf?version=1650887671 https://europepmc.org/articles/PMC9141109?pdf=render
Datenquelle: Europe PubMed Central
- Abstract
- Homorepeat sequences, consecutive runs of identical amino acids, are prevalent in eukaryotic proteins. It has become necessary to annotate and evaluate this feature in entire proteomes. The definition of what constitutes a homorepeat is not fixed, and different research approaches may require different definitions; therefore, flexible approaches to analyze homorepeats in complete proteomes are needed. Here, we present polyX2, a fast, simple but tunable script to scan protein datasets for all possible homorepeats. The user can modify the length of the window to scan, the minimum number of identical residues that must be found in the window, and the types of homorepeats to be found.
- Date of acceptance
- 2022
- Autoren
- Pablo Mier
- Miguel A Andrade-Navarro
- Autoren-URL
- https://www.ncbi.nlm.nih.gov/pubmed/35627143
- DOI
- 10.3390/genes13050758
- eISSN
- 2073-4425
- Externe Identifier
- PubMed Central ID: PMC9141109
- Ausgabe der Veröffentlichung
- 5
- Zeitschrift
- Genes (Basel)
- Schlüsselwörter
- homorepeats
- low-complexity regions
- web tool
- Amino Acids
- Eukaryota
- Eukaryotic Cells
- Proteome
- Repetitive Sequences, Amino Acid
- Sprache
- eng
- Country
- Switzerland
- PII
- genes13050758
- Datum der Veröffentlichung
- 2022
- Status
- Published online
- Datum, an dem der Datensatz öffentlich gemacht wurde
- 2022
- Titel
- PolyX2: Fast Detection of Homorepeats in Large Protein Datasets.
- Sub types
- Journal Article
- Ausgabe der Zeitschrift
- 13
Datenquelle: PubMed
- Beziehungen:
- Eigentum von