A High-Quality Genome Assembly from Short and Long Reads for the Non-biting Midge Chironomus riparius (Diptera)
- Publikationstyp:
- Zeitschriftenaufsatz
- Metadaten:
-
- Autoren
- Hanno Schmidt
- Soeren Lukas Hellmann
- Ann-Marie Waldvogel
- Barbara Feldmeyer
- Thomas Hankeln
- Markus Pfenninger
- Autoren-URL
- https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=fis-test-1&SrcAuth=WosAPI&KeyUT=WOS:000526762700001&DestLinkType=FullRecord&DestApp=WOS_CPL
- DOI
- 10.1534/g3.119.400710
- Externe Identifier
- Clarivate Analytics Document Solution ID: LE5MI
- PubMed Identifier: 32060047
- ISSN
- 2160-1836
- Ausgabe der Veröffentlichung
- 4
- Zeitschrift
- G3-GENES GENOMES GENETICS
- Schlüsselwörter
- hybrid genome assembly
- Chironomus riparius
- recombination rate
- Paginierung
- 1151 - 1157
- Datum der Veröffentlichung
- 2020
- Status
- Published
- Titel
- A High-Quality Genome Assembly from Short and Long Reads for the Non-biting Midge <i>Chironomus riparius</i> (Diptera)
- Sub types
- Article
- Ausgabe der Zeitschrift
- 10
Datenquelle: Web of Science (Lite)
- Andere Metadatenquellen:
-
- Abstract
- <jats:title>Abstract</jats:title> <jats:p>Chironomus riparius is of great importance as a study species in various fields like ecotoxicology, molecular genetics, developmental biology and ecology. However, only a fragmented draft genome exists to date, hindering the recent rush of population genomic studies in this species. Making use of 50 NGS datasets, we present a hybrid genome assembly from short and long sequence reads that make C. riparius’ genome one of the most contiguous Dipteran genomes published, the first complete mitochondrial genome of the species, and the respective recombination rate among the first insect recombination rates at all. The genome assembly and associated resources will be highly valuable to the broad community working with dipterans in general and chironomids in particular. The estimated recombination rate will help evolutionary biologists gaining a better understanding of commonalities and differences of genomic patterns in insects.</jats:p>
- Autoren
- Hanno Schmidt
- Sören Lukas Hellmann
- Ann-Marie Waldvogel
- Barbara Feldmeyer
- Thomas Hankeln
- Markus Pfenninger
- DOI
- 10.1534/g3.119.400710
- eISSN
- 2160-1836
- Ausgabe der Veröffentlichung
- 4
- Zeitschrift
- G3 Genes|Genomes|Genetics
- Sprache
- en
- Online publication date
- 2020
- Paginierung
- 1151 - 1157
- Datum der Veröffentlichung
- 2020
- Status
- Published
- Herausgeber
- Oxford University Press (OUP)
- Herausgeber URL
- http://dx.doi.org/10.1534/g3.119.400710
- Datum der Datenerfassung
- 2021
- Titel
- A High-Quality Genome Assembly from Short and Long Reads for the Non-biting Midge <i>Chironomus riparius</i> (Diptera)
- Ausgabe der Zeitschrift
- 10
Datenquelle: Crossref
- Abstract
- <i>Chironomus riparius</i> is of great importance as a study species in various fields like ecotoxicology, molecular genetics, developmental biology and ecology. However, only a fragmented draft genome exists to date, hindering the recent rush of population genomic studies in this species. Making use of 50 NGS datasets, we present a hybrid genome assembly from short and long sequence reads that make <i>C. riparius</i>' genome one of the most contiguous Dipteran genomes published, the first complete mitochondrial genome of the species, and the respective recombination rate among the first insect recombination rates at all. The genome assembly and associated resources will be highly valuable to the broad community working with dipterans in general and chironomids in particular. The estimated recombination rate will help evolutionary biologists gaining a better understanding of commonalities and differences of genomic patterns in insects.
- Addresses
- Molecular Ecology Group, Senckenberg Biodiversity and Climate Research Centre, Frankfurt am Main, Hessen, Germany.
- Autoren
- Hanno Schmidt
- Sören Lukas Hellmann
- Ann-Marie Waldvogel
- Barbara Feldmeyer
- Thomas Hankeln
- Markus Pfenninger
- DOI
- 10.1534/g3.119.400710
- eISSN
- 2160-1836
- Externe Identifier
- PubMed Identifier: 32060047
- PubMed Central ID: PMC7144091
- Open access
- true
- ISSN
- 2160-1836
- Ausgabe der Veröffentlichung
- 4
- Zeitschrift
- G3 (Bethesda, Md.)
- Schlüsselwörter
- Animals
- Chironomidae
- Genome
- Sprache
- eng
- Medium
- Electronic
- Online publication date
- 2020
- Open access status
- Open Access
- Paginierung
- 1151 - 1157
- Datum der Veröffentlichung
- 2020
- Status
- Published
- Publisher licence
- CC BY
- Datum der Datenerfassung
- 2020
- Titel
- A High-Quality Genome Assembly from Short and Long Reads for the Non-biting Midge <i>Chironomus riparius</i> (Diptera).
- Sub types
- research-article
- Journal Article
- Ausgabe der Zeitschrift
- 10
Files
https://academic.oup.com/g3journal/article-pdf/10/4/1151/37124375/g3journal1151.pdf https://europepmc.org/articles/PMC7144091?pdf=render
Datenquelle: Europe PubMed Central
- Abstract
- Chironomus riparius is of great importance as a study species in various fields like ecotoxicology, molecular genetics, developmental biology and ecology. However, only a fragmented draft genome exists to date, hindering the recent rush of population genomic studies in this species. Making use of 50 NGS datasets, we present a hybrid genome assembly from short and long sequence reads that make C. riparius' genome one of the most contiguous Dipteran genomes published, the first complete mitochondrial genome of the species, and the respective recombination rate among the first insect recombination rates at all. The genome assembly and associated resources will be highly valuable to the broad community working with dipterans in general and chironomids in particular. The estimated recombination rate will help evolutionary biologists gaining a better understanding of commonalities and differences of genomic patterns in insects.
- Autoren
- Hanno Schmidt
- Sören Lukas Hellmann
- Ann-Marie Waldvogel
- Barbara Feldmeyer
- Thomas Hankeln
- Markus Pfenninger
- Autoren-URL
- https://www.ncbi.nlm.nih.gov/pubmed/32060047
- DOI
- 10.1534/g3.119.400710
- eISSN
- 2160-1836
- Externe Identifier
- PubMed Central ID: PMC7144091
- Ausgabe der Veröffentlichung
- 4
- Zeitschrift
- G3 (Bethesda)
- Schlüsselwörter
- Chironomus riparius
- hybrid genome assembly
- recombination rate
- Animals
- Chironomidae
- Genome
- Sprache
- eng
- Country
- England
- Paginierung
- 1151 - 1157
- PII
- g3.119.400710
- Datum der Veröffentlichung
- 2020
- Status
- Published online
- Datum, an dem der Datensatz öffentlich gemacht wurde
- 2021
- Titel
- A High-Quality Genome Assembly from Short and Long Reads for the Non-biting Midge Chironomus riparius (Diptera).
- Sub types
- Journal Article
- Ausgabe der Zeitschrift
- 10
Datenquelle: PubMed
- Beziehungen:
- Eigentum von