An Annotated Draft Genome for Radix auricularia (Gastropoda, Mollusca)

Publikationstyp:
Zeitschriftenaufsatz
Metadaten:
Autoren
  • Tilman Schell
  • Barbara Feldmeyer
  • Hanno Schmidt
  • Bastian Greshake
  • Oliver Tills
  • Manuela Truebano
  • Simon D Rundle
  • Juraj Paule
  • Ingo Ebersberger
  • Markus Pfenninger
Autoren-URL
https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=fis-test-1&SrcAuth=WosAPI&KeyUT=WOS:000402095700016&DestLinkType=FullRecord&DestApp=WOS_CPL
DOI
10.1093/gbe/evx032
Externe Identifier
  • Clarivate Analytics Document Solution ID: EV9HC
  • PubMed Identifier: 28204581
ISSN
1759-6653
Ausgabe der Veröffentlichung
3
Zeitschrift
GENOME BIOLOGY AND EVOLUTION
Schlüsselwörter
  • de novo assembly
  • genome size
  • repeats
Paginierung
585 - 592
Datum der Veröffentlichung
2017
Status
Published
Titel
An Annotated Draft Genome for <i>Radix auricularia</i> (Gastropoda, Mollusca)
Sub types
  • Article
Ausgabe der Zeitschrift
9

Datenquelle: Web of Science (Lite)

Andere Metadatenquellen:
Autoren
  • Tilman Schell
  • Barbara Feldmeyer
  • Hanno Schmidt
  • Bastian Greshake
  • Oliver Tills
  • Manuela Truebano
  • Simon D Rundle
  • Juraj Paule
  • Ingo Ebersberger
  • Markus Pfenninger
DOI
10.1093/gbe/evx032
eISSN
1759-6653
Ausgabe der Veröffentlichung
3
Zeitschrift
Genome Biology and Evolution
Sprache
en
Online publication date
2017
Paginierung
585 - 592
Datum der Veröffentlichung
2017
Status
Published
Herausgeber
Oxford University Press (OUP)
Herausgeber URL
http://dx.doi.org/10.1093/gbe/evx032
Datum der Datenerfassung
2022
Titel
An Annotated Draft Genome for Radix auricularia (Gastropoda, Mollusca)
Ausgabe der Zeitschrift
9

Datenquelle: Crossref

Autoren
  • Tilman Schell
  • Barbara Feldmeyer
  • Hanno Schmidt
  • Bastian Greshake
  • Oliver Tills
  • Manuela Truebano
  • Simon D Rundle
  • Juraj Paule
  • Ingo Ebersberger
  • Markus Pfenninger
DOI
10.1093/gbe/evx032
eISSN
1759-6653
Externe Identifier
  • PubMed Identifier: 28204581
  • PubMed Central ID: PMC5381561
Funding acknowledgements
  • Natural Environment Research Council: NBAF010003
Open access
true
ISSN
1759-6653
Zeitschrift
Genome biology and evolution
Sprache
eng
Medium
Print-Electronic
Online publication date
2017
Open access status
Open Access
Datum der Veröffentlichung
2017
Status
Published
Publisher licence
CC BY-NC
Datum der Datenerfassung
2017
Titel
An annotated draft genome for Radix auricularia (Gastropoda, Mollusca).
Sub types
  • research-article
  • Journal Article

Files

https://academic.oup.com/gbe/article-pdf/9/3/585/11027238/evx032.pdf https://europepmc.org/articles/PMC5381561?pdf=render

Datenquelle: Europe PubMed Central

Abstract
Molluscs are the second most species-rich phylum in the animal kingdom, yet only 11 genomes of this group have been published so far. Here, we present the draft genome sequence of the pulmonate freshwater snail Radix auricularia. Six whole genome shotgun libraries with different layouts were sequenced. The resulting assembly comprises 4,823 scaffolds with a cumulative length of 910 Mb and an overall read coverage of 72×. The assembly contains 94.6% of a metazoan core gene collection, indicating an almost complete coverage of the coding fraction. The discrepancy of ∼690 Mb compared with the estimated genome size of R. auricularia (1.6 Gb) results from a high repeat content of 70% mainly comprising DNA transposons. The annotation of 17,338 protein coding genes was supported by the use of publicly available transcriptome data. This draft will serve as starting point for further genomic and population genetic research in this scientifically important phylum.
Date of acceptance
2017
Autoren
  • Tilman Schell
  • Barbara Feldmeyer
  • Hanno Schmidt
  • Bastian Greshake
  • Oliver Tills
  • Manuela Truebano
  • Simon D Rundle
  • Juraj Paule
  • Ingo Ebersberger
  • Markus Pfenninger
Autoren-URL
https://www.ncbi.nlm.nih.gov/pubmed/28204581
DOI
10.1093/gbe/evx032
eISSN
1759-6653
Externe Identifier
  • PubMed Central ID: PMC5381561
Ausgabe der Veröffentlichung
3
Zeitschrift
Genome Biol Evol
Sprache
eng
Country
England
Paginierung
0
PII
2997437
Datum der Veröffentlichung
2017
Status
Published online
Titel
An annotated draft genome for Radix auricularia (Gastropoda, Mollusca).
Sub types
  • Journal Article
Ausgabe der Zeitschrift
9

Datenquelle: PubMed

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